ExcludonFinder

ExcludonFinder v1.0 - a web server tool that predicts overlaps between the 5' and 3' UTRs of neighbouring genes by analyzing RNA-seq signal coverage.

This website is free and open to all users and there is no login requirement.

New to ExcludonFinder? Try our example dataset from E. coli K-12 using the "Use Example Input" buttons below. RNA-seq data is synthetic data, the reulting ouptut files do not represent real features.

Input Files

Job Name

Reference Genome (FASTA)

Accepted formats: .fasta, .fna, .fa, .fas

Annotations (GFF)

Accepted formats: .gff, .gff3, .gtf

RNA-seq Forward Reads (FASTQ)

Accepted formats: .fastq, .fq, .fastq.gz, .fq.gz

RNA-seq Reverse Reads (FASTQ)

Optional for single-end RNA-seq data

Parameters

Coverage Threshold

Default: 0.5

Long RNA-seq reads (for Oxford Nanopore sequencing)